When it comes to choosing a payroll system, you can process payroll in-house, manually or with software, or you can outsource payroll to your accountant or a payroll service. Processing payroll manually requires the least amount of direct investment, but is the riskiest and takes the most time. You determine your own system to calculate wages and deductions, submit tax deposits, and write and distribute paychecks. You can also process payroll in-house using payroll software. Most software packages offer varying degrees of support -- from providing you with tax tables that will help you make the right deductions to providing you with a direct deposit program. A software package will cost you a few hundred dollars, and you'll have to purchase upgrades when they become available.

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